Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETD1A

Cell type

Cell type Class
Blood
Cell type
Erythroblasts
MeSH Description
Immature, nucleated ERYTHROCYTES occupying the stage of ERYTHROPOIESIS that follows formation of ERYTHROID PRECURSOR CELLS and precedes formation of RETICULOCYTES. The normal series is called normoblasts. Cells called MEGALOBLASTS are a pathologic series of erythroblasts.

Attributes by original data submitter

Sample

source_name
erythroblast
cell type
Adult erythroblasts
chip antibody
SET1 (A300-289A)
number of sonications
1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
as described by Pope SH et al, Eur J Haematol 64:292-303, 2000 library construction was provided by Oxford Genomics Centre, or by Edinburgh Genomics

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
46539848
Reads aligned (%)
32.0
Duplicates removed (%)
81.4
Number of peaks
2128 (qval < 1E-05)

hg38

Number of total reads
46539848
Reads aligned (%)
33.9
Duplicates removed (%)
80.4
Number of peaks
2246 (qval < 1E-05)

Base call quality data from DBCLS SRA