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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: IM-95
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4036946
GSM3130738: IM95 INPUT; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Digestive tract
Cell type
IM-95
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
Gastric Cancer Line
cell line
IM95
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were prepared following manufacturer protocols (New England Biolabs). RNAseq libraries were prepared using Illumina Tru-Seq RNA Sample Preparation v2 protocol, according to the manufacturer's instructions.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
70008509
Reads aligned (%)
99.0
Duplicates removed (%)
25.8
Number of peaks
637 (qval < 1E-05)
hg19
Number of total reads
70008509
Reads aligned (%)
98.6
Duplicates removed (%)
26.5
Number of peaks
845 (qval < 1E-05)
Base call quality data from
DBCLS SRA