Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
MECs, p13, no treatment, input
strain/background
outbred
cell type
mammary epithelial cells (MECs)
developmental stage
day 13 of pregnancy
treatment
none
chip antibody
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
10281585
Reads aligned (%)
70.9
Duplicates removed (%)
4.2
Number of peaks
97 (qval < 1E-05)

mm9

Number of total reads
10281585
Reads aligned (%)
70.8
Duplicates removed (%)
4.2
Number of peaks
86 (qval < 1E-05)

Base call quality data from DBCLS SRA