SRX4017959
GSM3123502: Uhrf1 KO mESC Sox2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Uhrf1 KO E14 mESC
cell type
E14 mESC
status
Undifferentiated
genotype
Uhrf1 KO
antibody
anti-Sox2 (#23064, Cell Signaling Technology)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA and TF-DNA complexes were isolated with antibody Illumina TrueSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19119685
Reads aligned (%)
95.5
Duplicates removed (%)
16.7
Number of peaks
6311 (qval < 1E-05)

mm9

Number of total reads
19119685
Reads aligned (%)
95.2
Duplicates removed (%)
16.8
Number of peaks
6539 (qval < 1E-05)

Base call quality data from DBCLS SRA