SRX4017951
GSM3123494: Uhrf1 KO EB week2 H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Uhrf1 KO E14 mESC-derived EB
cell type
E14 mESC-derived EB
status
Differentiated at week2
genotype
Uhrf1 KO
antibody
anti-H3K4me3 (07-473, Millipore)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone-DNA and TF-DNA complexes were isolated with antibody Illumina TrueSeq ChIP Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22817079
Reads aligned (%)
97.1
Duplicates removed (%)
14.5
Number of peaks
11601 (qval < 1E-05)

mm9

Number of total reads
22817079
Reads aligned (%)
96.9
Duplicates removed (%)
14.5
Number of peaks
11625 (qval < 1E-05)

Base call quality data from DBCLS SRA