SRX4017887
GSM3123431: MCF10DCIS p63; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP63

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
p63 ChIPseq of MCF10DCIS cells
subtype
MCF10DCIS
antibody
p63
cell type
MCF10DCIS cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
79450340
Reads aligned (%)
91.4
Duplicates removed (%)
30.4
Number of peaks
3022 (qval < 1E-05)

hg38

Number of total reads
79450340
Reads aligned (%)
92.3
Duplicates removed (%)
28.6
Number of peaks
3748 (qval < 1E-05)

Base call quality data from DBCLS SRA