Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

breed
c57bl/6
age
P28
sex
male
tissue
testis

Sequenced DNA Library

library_name
Sox30 ChIP-seq (Wild Type)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
HiSeq X Ten

mm10

Number of total reads
38787589
Reads aligned (%)
0.0
Duplicates removed (%)
27.1
Number of peaks
63 (qval < 1E-05)

mm9

Number of total reads
38787589
Reads aligned (%)
0.0
Duplicates removed (%)
27.1
Number of peaks
56 (qval < 1E-05)

Base call quality data from DBCLS SRA