SRX4003677
GSM3118963: wt, replicate 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
BCR-ABL+ cell lines
strain
C57BL/6N
tissue
Pre/Pro-B-cells
genotype
wildtype

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
QIAGEN RNeasy extraction kit Phenol-Chloroform extraction RNA-seq: SENSE mRNA-Seq Library Prep kit, 50 bp single-end, ChIP-seq: NEB Ultra DNA Library Prep kit;

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51523685
Reads aligned (%)
92.5
Duplicates removed (%)
45.3
Number of peaks
7276 (qval < 1E-05)

mm9

Number of total reads
51523685
Reads aligned (%)
92.3
Duplicates removed (%)
45.3
Number of peaks
7250 (qval < 1E-05)

Base call quality data from DBCLS SRA