SRX4001986
GSM3112863: Th0-48h; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Naïve CD4+ T cells from spleen
strain
C57BL/6
tissue
spleen
cell type
naive CD4+ T cells
genotype
wild type
polarization
Th0
batch
B1

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells harvest was followed by a transposition reaction and purification (Buenrostro et al. Curr Protoc Mol Biol. 2015) Prepared as in Buenrostro et al. Curr Protoc Mol Biol. 2015

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19112295
Reads aligned (%)
95.5
Duplicates removed (%)
42.6
Number of peaks
5820 (qval < 1E-05)

mm9

Number of total reads
19112295
Reads aligned (%)
95.4
Duplicates removed (%)
42.7
Number of peaks
5810 (qval < 1E-05)

Base call quality data from DBCLS SRA