Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 monocyte AML cell line
cell type
THP-1 monocyte AML cell line
treatment
Pam3csk4 treated (4h)
treatment time
04h
donor or replicate
rep1
electroporated mrna
eGFP
sirna
none
chip antibody
PU.1, Santa Cruz: sc-352

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
12694458
Reads aligned (%)
88.4
Duplicates removed (%)
10.1
Number of peaks
74676 (qval < 1E-05)

hg38

Number of total reads
12694458
Reads aligned (%)
89.1
Duplicates removed (%)
9.7
Number of peaks
74733 (qval < 1E-05)

Base call quality data from DBCLS SRA