SRX3993050
ChIP-seq of mus musculus: Adult Total Thymocytes

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

strain
C56BL/6
dev_stage
Total Thymus
sex
female
tissue
Thymus
name
WT HEB ChIP-seq Rep 1

Sequenced DNA Library

library_name
WT HEB ChIP-seq Rep 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28337563
Reads aligned (%)
95.3
Duplicates removed (%)
14.7
Number of peaks
2524 (qval < 1E-05)

mm9

Number of total reads
28337563
Reads aligned (%)
95.1
Duplicates removed (%)
14.7
Number of peaks
2529 (qval < 1E-05)

Base call quality data from DBCLS SRA