SRX3993044
ChIP-seq of mus musculus: Adult Total Thymocytes

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

strain
C56BL/6
dev_stage
Total Thymus
sex
male
tissue
Thymus
name
WT H3K4Me3 ChIP-seq

Sequenced DNA Library

library_name
WT H3K4Me3 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9846409
Reads aligned (%)
97.7
Duplicates removed (%)
19.4
Number of peaks
26098 (qval < 1E-05)

mm9

Number of total reads
9846409
Reads aligned (%)
97.6
Duplicates removed (%)
19.6
Number of peaks
26203 (qval < 1E-05)

Base call quality data from DBCLS SRA