SRX3991261
GSM3110080: illu-ctl-2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
YB5
NA
NA

Attributes by original data submitter

Sample

source_name
YB5 colon cancer cell line
cell type
colon cancer cell line
sample type
Dukes' type C, grade IV, colorectal adenocarcinoma
gender
female

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
none provided by the submitter

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20599292
Reads aligned (%)
95.2
Duplicates removed (%)
73.7
Number of peaks
2706 (qval < 1E-05)

hg19

Number of total reads
20599292
Reads aligned (%)
95.1
Duplicates removed (%)
73.8
Number of peaks
2755 (qval < 1E-05)

Base call quality data from DBCLS SRA