Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Breast
Cell type
NMuMG
Tissue
Mammary Gland

Attributes by original data submitter

Sample

source_name
NMuMG cells
treatment
Lentiviral transfection of shPBRM1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
16451512
Reads aligned (%)
64.6
Duplicates removed (%)
21.9
Number of peaks
309 (qval < 1E-05)

mm9

Number of total reads
16451512
Reads aligned (%)
64.6
Duplicates removed (%)
21.9
Number of peaks
299 (qval < 1E-05)

Base call quality data from DBCLS SRA