SRX3985664
WT H3 ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
C57BL/6
characteristics: ChIP antibody
H3 (Abcam, #ab1791 )
age
WT H3 - Cell lines
sex
not collected
tissue
Embryonic Fibroblasts

Sequenced DNA Library

library_name
WT H3_ChIPseq_ILLUMINA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23094458
Reads aligned (%)
98.5
Duplicates removed (%)
15.1
Number of peaks
211 (qval < 1E-05)

mm9

Number of total reads
23094458
Reads aligned (%)
98.3
Duplicates removed (%)
15.1
Number of peaks
219 (qval < 1E-05)

Base call quality data from DBCLS SRA