SRX3985661
KO Input DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
C57BL/6
characteristics: ChIP antibody
none
age
KO Input - Cell lines
sex
not collected
tissue
Embryonic Fibroblasts

Sequenced DNA Library

library_name
KO Input DNA_ILLUMINA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23369688
Reads aligned (%)
96.6
Duplicates removed (%)
14.2
Number of peaks
265 (qval < 1E-05)

mm9

Number of total reads
23369688
Reads aligned (%)
96.5
Duplicates removed (%)
14.2
Number of peaks
289 (qval < 1E-05)

Base call quality data from DBCLS SRA