SRX3934087
GSM3096621: HL-60 INTS13 shNAB2-2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS13

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL-60 cell line
chip antibody
INTS13, Bethyl A303-575A
cell line
HL-60
treatment
PMA treated (16h)
infection
shRNA against shNAB2 (NAB2 KD)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32970634
Reads aligned (%)
93.3
Duplicates removed (%)
15.9
Number of peaks
15255 (qval < 1E-05)

hg19

Number of total reads
32970634
Reads aligned (%)
92.3
Duplicates removed (%)
18.4
Number of peaks
14880 (qval < 1E-05)

Base call quality data from DBCLS SRA