Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878-p300
biomaterial_provider
GM12878
cell line
GM12878
chip antibody
mose monoclonal p300
chip antibody info
custom generated; 1F4_E10

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed using 1% formaldehyde (NRSF samples) or 1% formaldehyde at 37C (p300 samples). Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
17190854
Reads aligned (%)
80.2
Duplicates removed (%)
10.3
Number of peaks
4917 (qval < 1E-05)

hg38

Number of total reads
17190854
Reads aligned (%)
81.8
Duplicates removed (%)
9.2
Number of peaks
4718 (qval < 1E-05)

Base call quality data from DBCLS SRA