Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

source_name
Spermatozoa
sperm fraction
Total sperm
strain
C57BL/6
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After treatment of sperm decondensation buffer, lysates were prepared from sonicated sperm cells, and then H3-DNA complexes were isolated by H3 antibody. ChIP-seq libraries were prepared by the Illumina TruSeq_LT, and sequenced on Illumina Nextseq (151-bp paired end).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
18166208
Reads aligned (%)
67.0
Duplicates removed (%)
37.9
Number of peaks
472 (qval < 1E-05)

mm9

Number of total reads
18166208
Reads aligned (%)
66.7
Duplicates removed (%)
38.7
Number of peaks
470 (qval < 1E-05)

Base call quality data from DBCLS SRA