SRX3918041
GSM3090927: LEC 1 H3K4me2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
Lateral entorhinal cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Adult (P56) cortical tissue
strain
C57BL6J
tissue
lateral entorhinal cortex (LEC)
h3k27ac antibody
Diagenode (pAb-196-050) lot # A1723-0041D
h3k4me2 antibody
ab7777 (Lot GR102810-2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cotney and Noonan, CSHL Protocols 2015. Rubicon Genomics Thruplex 48S

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39158417
Reads aligned (%)
94.1
Duplicates removed (%)
16.7
Number of peaks
56663 (qval < 1E-05)

mm9

Number of total reads
39158417
Reads aligned (%)
94.1
Duplicates removed (%)
16.7
Number of peaks
56600 (qval < 1E-05)

Base call quality data from DBCLS SRA