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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Anterior cingulate cortex
ATCC
MeSH
RIKEN BRC
SRX3918038
GSM3090924: ACC 2 H3K4me2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Neural
Cell type
Anterior cingulate cortex
NA
NA
Attributes by original data submitter
Sample
source_name
Adult (P56) cortical tissue
strain
C57BL6J
tissue
anterior cingulate cortex (ACC)
h3k27ac antibody
Diagenode (pAb-196-050) lot # A1723-0041D
h3k4me2 antibody
ab7777 (Lot GR102810-2)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cotney and Noonan, CSHL Protocols 2015. Rubicon Genomics Thruplex 48S
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
37335224
Reads aligned (%)
95.4
Duplicates removed (%)
13.1
Number of peaks
54775 (qval < 1E-05)
mm9
Number of total reads
37335224
Reads aligned (%)
95.3
Duplicates removed (%)
13.2
Number of peaks
54746 (qval < 1E-05)
Base call quality data from
DBCLS SRA