Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Adult
Cell type
Testis

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
fruitfly testis nos>shRNA E(z)
tissue
testis specifically expressing E(z) shmiR RNAi in germ cells
chip antibody
none
sample type
input DNA

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
4% formaldehyde fixed testes were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries are prepared following G. Wei, G. Hu, K. Cui, K. Zhao, Methods Enzymol 513, 297 (2012).

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
8923441
Reads aligned (%)
90.6
Duplicates removed (%)
76.7
Number of peaks
512 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA