Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cell
tissue
embryonic stem cell
chip antibody
H3K36me3 (Active Motif, Cat.61021)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The DNA extraction follows STAR ChIP-seq protocol The STAR ChIP-seq libraries were generated following the protocol as described previously(Zhang et al., 2016).

Sequencing Platform

instrument_model
HiSeq X Ten

mm10

Number of total reads
12053030
Reads aligned (%)
72.4
Duplicates removed (%)
14.7
Number of peaks
63 (qval < 1E-05)

mm9

Number of total reads
12053030
Reads aligned (%)
72.3
Duplicates removed (%)
14.7
Number of peaks
47 (qval < 1E-05)

Base call quality data from DBCLS SRA