Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K36me3
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX3899507
GSM3084634: ChIP ICM H3K36me3 rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K36me3
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
source_name
embryo
tissue
embryo
developmental stage
ICM
chip antibody
H3K36me3 (Active Motif, Cat.61021)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The DNA extraction follows STAR ChIP-seq protocol The STAR ChIP-seq libraries were generated following the protocol as described previously(Zhang et al., 2016).
Sequencing Platform
instrument_model
HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
37620441
Reads aligned (%)
81.5
Duplicates removed (%)
32.9
Number of peaks
154 (qval < 1E-05)
mm9
Number of total reads
37620441
Reads aligned (%)
81.2
Duplicates removed (%)
32.9
Number of peaks
135 (qval < 1E-05)
Base call quality data from
DBCLS SRA