SRX3899500
GSM3084627: ChIP 1C H3K36me3 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
embryo
tissue
embryo
developmental stage
1C
chip antibody
H3K36me3 (Active Motif, Cat.61021)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The DNA extraction follows STAR ChIP-seq protocol The STAR ChIP-seq libraries were generated following the protocol as described previously(Zhang et al., 2016).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24562781
Reads aligned (%)
53.7
Duplicates removed (%)
45.0
Number of peaks
89 (qval < 1E-05)

mm9

Number of total reads
24562781
Reads aligned (%)
53.6
Duplicates removed (%)
44.9
Number of peaks
75 (qval < 1E-05)

Base call quality data from DBCLS SRA