Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Natural Killer T-Cells

MeSH Description

A specific natural killer T-cell subtype that expresses an invariant T-cell receptor alpha-chain.

Sample

source_name

CD56Dim natural killer cells

cell type

CD56Dim natural killer cells

individual

Donor 3

antibody

DNA - accessability. Illumina FC-121-1030

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Lysates were clarified from MNase treated nuclei and histone-DNA complexes were isolated with antibody. ATAC-seq were processed as per manufacturers instructions (Illumina FC-121-1030)

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

60081952

Reads aligned (%)

89.5

Duplicates removed (%)

14.9

Number of peaks

22736 (qval < 1E-05)

hg19

Number of total reads

60081952

Reads aligned (%)

89.0

Duplicates removed (%)

15.3

Number of peaks

22575 (qval < 1E-05)