SRX3897572
input control in HMGN1 knock out NP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
C57BL/6
age
13.5 day embyo
biomaterial_provider
Michael Bustin, NIH/NCI
sex
NA
tissue
MEF

Sequenced DNA Library

library_name
input_ChIP_N1KO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25918997
Reads aligned (%)
97.0
Duplicates removed (%)
14.7
Number of peaks
656 (qval < 1E-05)

mm9

Number of total reads
25918997
Reads aligned (%)
96.6
Duplicates removed (%)
14.7
Number of peaks
748 (qval < 1E-05)

Base call quality data from DBCLS SRA