Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived epidermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
epidermal differentiaiton from hESC at D21
cell type
immature epidermal progenitor cell
genotype
TetO-TFAP2C+CRISPR-p63KO
treatment and stage
Differentiation at D21

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Around 50,000 cells were used for each transposition reaction. Nuclei were prepared prior to transposition. Sequencing libraries were constructed using a modified version of the Illumina Nextera DNA Sample prep kit.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
190087918
Reads aligned (%)
69.7
Duplicates removed (%)
79.7
Number of peaks
8705 (qval < 1E-05)

hg19

Number of total reads
190087918
Reads aligned (%)
69.4
Duplicates removed (%)
80.0
Number of peaks
8405 (qval < 1E-05)

Base call quality data from DBCLS SRA