Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+ T cells
strain
C57BL/6
tissue
spleen
cell type
T cell
antibody
H3K9me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Native ChIP was performed. Nuclei from cultured CD8 T cells was extracted with 50mM Tris, 1mM CaCl2, 0.2% Triton, and proteinase inhibitors. Then nuclei were subjected to micrococcal nuclease digestion for 5min. Soluble chromatin was used for input and immunoprecipitation with anti-H3K9me3 (ab8898). DNA was prepped by Genome Technology Access Center using standard ChIP library prep for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
33600695
Reads aligned (%)
97.6
Duplicates removed (%)
34.1
Number of peaks
1745 (qval < 1E-05)

mm9

Number of total reads
33600695
Reads aligned (%)
97.1
Duplicates removed (%)
34.0
Number of peaks
1719 (qval < 1E-05)

Base call quality data from DBCLS SRA