Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Prostate cancer
strain
129/C57Bl6
genotype
Pten-/- Rosa26-Tmprss2-ERG
manipulation
CRISPR-ERG
tissue
Prostate cancer

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
cells are fixed by 0.8%PFA and lysised in low-salt wash buufer with 0.1% SDS and 1% Triton X-100 CHIP-Seq was performed by New York genome center. DNA was adenylated, ligated to Illumina sequencing adapters, and amplified by PCR (using 10 cycles).  Final libraries were quantified using the KAPA Library Quantification Kit (KAPA Biosystems), Next generation sequencing was carried out on an Illumina HiSeq2000 plateform with 50 bp or 100 bp single reads.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17088254
Reads aligned (%)
99.3
Duplicates removed (%)
2.1
Number of peaks
9367 (qval < 1E-05)

mm9

Number of total reads
17088254
Reads aligned (%)
99.2
Duplicates removed (%)
2.3
Number of peaks
9342 (qval < 1E-05)

Base call quality data from DBCLS SRA