Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Cardiovascular

Cell type

HAEC

Primary Tissue

Aorta

Tissue Diagnosis

Normal

Sample

source_name

Human Aortic Endothelial Cells

flow

Disturbed Flow

passage

5-10

cell id

UCLA J119

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

For ATAC the cells were collected by trypsinizing and washed prior to being lysed. ATAC-seq was performed as described in (Buenrostro et al., 2013) using Tn5 transposase (Illumina, San Diego CA).

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

47185660

Reads aligned (%)

87.0

Duplicates removed (%)

76.2

Number of peaks

14753 (qval < 1E-05)

hg19

Number of total reads

47185660

Reads aligned (%)

86.8

Duplicates removed (%)

76.5

Number of peaks

14681 (qval < 1E-05)