Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEFs D7_AGHMT_H3K27ac
background strain
C57BL/6
tissue
Mouse embryonic fibroblast (MEF)
treatment
AGHMT
induction time
7 days
development stage
7 days
antibody
H3K27ac (Diagenode, C15410196)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MEFs two or seven days after retroviral transduction were crosslinked with 1% formaldehyde in PBS for 30 min and neutralized by the addition of glycine to a final concentration of 0.125M for 5min. MEFs were then harvested and washed with cold PBS for ChIP. For mouse heart sample preparation, ChIP was performed as previously described (Huang et al., 2016; Xu et al., 2012), or by using ChIP-IT Express ChIP kits (Active Motif) following the vender's protocol. ChIP-seq libraries were generated using KAPA Hyper Prep Kit following the manufacturer's protocol (Kapa Biosystems).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
27662143
Reads aligned (%)
90.1
Duplicates removed (%)
32.0
Number of peaks
40274 (qval < 1E-05)

mm9

Number of total reads
27662143
Reads aligned (%)
90.0
Duplicates removed (%)
32.0
Number of peaks
40311 (qval < 1E-05)

Base call quality data from DBCLS SRA