SRX384481
GSM1276019: Pol II ChIP-seq control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
MCF-7
passages
10 – 20
treatment
Non-treated
antibody
RNA Polymerase II ChIP (sc-224x)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard ChIP protocol Illumina HiSeq 2000 platform, according to manufacturer's protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
163028744
Reads aligned (%)
92.5
Duplicates removed (%)
23.0
Number of peaks
24537 (qval < 1E-05)

hg19

Number of total reads
163028744
Reads aligned (%)
92.0
Duplicates removed (%)
23.9
Number of peaks
24379 (qval < 1E-05)

Base call quality data from DBCLS SRA