Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MGA

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Cancer cell line
cell line
A549
antibody
MGA (Sigma #HPA042278)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

hg19

Number of total reads
4867451
Reads aligned (%)
88.2
Duplicates removed (%)
9.2
Number of peaks
2324 (qval < 1E-05)

hg38

Number of total reads
4867451
Reads aligned (%)
89.5
Duplicates removed (%)
8.5
Number of peaks
2281 (qval < 1E-05)

Base call quality data from DBCLS SRA