Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
M370I Treg cells
strain
M370I-Tg-B6
cell type
Treg cells
genotype/variation
mutant M370I

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested from mice that were approximately 3-4 weeks old. Lymph nodes and spleen cells were sorted based on CD4, CD25,GITR and Fr4 or CD4, CD25, Foxp3-GFP. Cells were fixed with formaldehyde, nuclei were extracted and sonicated. For RNA-seq total RNA was extracted using Quiagen's RNeasy Kit and TRIzol reagent ChIP DNA was prepared for high throughput sequencing library using Accel-NGS 2S Plus DNA library kit ChIP-seq and HiChIP with Illumina Hiseq4000, Illumina HiSeq 2500 single-end 50bp sequencing platform for RNA-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
116322155
Reads aligned (%)
98.3
Duplicates removed (%)
11.2
Number of peaks
1108 (qval < 1E-05)

mm9

Number of total reads
116322155
Reads aligned (%)
98.1
Duplicates removed (%)
11.2
Number of peaks
1337 (qval < 1E-05)

Base call quality data from DBCLS SRA