SRX3816062
GSM3053287: H3K4me3 ChIP-seq, GC-1 KRAB-1 #1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Gonad
Cell type
GC-1 spg
Tissue
Testis
Cell Type
Transformed With Psv3-Neo
Disease
Spermatogonia

Attributes by original data submitter

Sample

source_name
Spg GC-1 cell line
strain
BALB/c
tissue
Spg GC-1 cell line
antibody
Millipore (#07-473)
genotype
SPG GC-1 cells expressing GFP-PRDM9-KRAB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed on fixed tissue

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
114435320
Reads aligned (%)
94.4
Duplicates removed (%)
16.8
Number of peaks
18430 (qval < 1E-05)

mm9

Number of total reads
114435320
Reads aligned (%)
94.2
Duplicates removed (%)
16.8
Number of peaks
18592 (qval < 1E-05)

Base call quality data from DBCLS SRA