Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Effector H3K4me3 Kaech
cell type
CD8+ T cells
cell subset
Effector
assay
H3K4me3
lab
Kaech
run
Sample_G_5_007
librarylayout
SINGLE
replicate
2
chip antibody
H3K4me3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
22583099
Reads aligned (%)
89.1
Duplicates removed (%)
21.0
Number of peaks
17536 (qval < 1E-05)

mm9

Number of total reads
22583099
Reads aligned (%)
88.8
Duplicates removed (%)
21.1
Number of peaks
17547 (qval < 1E-05)

Base call quality data from DBCLS SRA