SRX3792963
ChIP-seq of mouse kidney fibroblasts

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
Kidney fibroblasts
NA
NA

Attributes by original data submitter

Sample

strain
C57BL
isolate
Chip-sequencing
dev_stage
LacZ sgRNA replicate1
sex
male
tissue
Kidney fibroblasts
biomaterial_provider
primary cell culture
cell_line
mouse kidney fibroblasts

Sequenced DNA Library

library_name
Zeisberg_ChIP-seq_02
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39621270
Reads aligned (%)
72.9
Duplicates removed (%)
84.0
Number of peaks
188 (qval < 1E-05)

mm9

Number of total reads
39621270
Reads aligned (%)
72.7
Duplicates removed (%)
84.1
Number of peaks
204 (qval < 1E-05)

Base call quality data from DBCLS SRA