Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Uterus
Cell type
KB
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ChIP-Seq Analysis of H3K9me3 in KB Cells
treatment
10ng/ml IL-1alpha for 1 h
antibody
anti-H3K9me3 (Abcam, ab8898)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP lysis buffer (1% SDS, 10mM EDTA, 50mM Tris pH 8.1, 1mM PMSF, Roche protease inhibitor mix), followed by IP and purification of DNA Sequencing libraries were prepared from 10 ng of immunoprecipitated DNA with the Illumina ChIPSeq DNA Sample Prep Kit according to Illuminas’ instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
31433049
Reads aligned (%)
97.6
Duplicates removed (%)
12.9
Number of peaks
3250 (qval < 1E-05)

hg19

Number of total reads
31433049
Reads aligned (%)
96.7
Duplicates removed (%)
14.6
Number of peaks
3396 (qval < 1E-05)

Base call quality data from DBCLS SRA