Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
KB
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ChIP-Seq Analysis of RNA Pol II in KB Cells
treatment
10ng/ml IL-1alpha for 1 h
antibody
anti-Pol II (Millipore, 17-620)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP lysis buffer (1% SDS, 10mM EDTA, 50mM Tris pH 8.1, 1mM PMSF, Roche protease inhibitor mix), followed by IP and purification of DNA Sequencing libraries were prepared from 10 ng of immunoprecipitated DNA with the Illumina ChIPSeq DNA Sample Prep Kit according to Illuminas’ instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
37831622
Reads aligned (%)
70.0
Duplicates removed (%)
69.3
Number of peaks
15958 (qval < 1E-05)

hg19

Number of total reads
37831622
Reads aligned (%)
69.3
Duplicates removed (%)
70.6
Number of peaks
15945 (qval < 1E-05)

Base call quality data from DBCLS SRA