SRX3783087
HCC1806 p73 ChIP 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
HCC1806
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
not applicable
sex
female
tissue
breast
cell_line
HCC1806
cell_type
breast cancer
sample_id
2653-JP-39

Sequenced DNA Library

library_name
2653-JP-39
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35928761
Reads aligned (%)
73.9
Duplicates removed (%)
63.5
Number of peaks
2021 (qval < 1E-05)

hg19

Number of total reads
35928761
Reads aligned (%)
73.5
Duplicates removed (%)
64.7
Number of peaks
2026 (qval < 1E-05)

Base call quality data from DBCLS SRA