SRX378285
GSM1267210: CTCF CHIP-Seq, H1 Trophectoderm cells, replicate one; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived trophoblast cells
NA
NA

Attributes by original data submitter

Sample

source_name
H1 Trophectoderm cells
cell type
H1 Trophectoderm cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing libraries were constructed according to previous publication (Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-93 (2009).).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52524423
Reads aligned (%)
59.0
Duplicates removed (%)
20.5
Number of peaks
67377 (qval < 1E-05)

hg19

Number of total reads
52524423
Reads aligned (%)
58.6
Duplicates removed (%)
21.4
Number of peaks
67085 (qval < 1E-05)

Base call quality data from DBCLS SRA