SRX378046
GSM1266728: HNF4A ChIPSeq DSS; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hnf4a

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colonic epithelial cells
antibody
HNF4A (ab41898, Abcam, lot # GR4841-13)
treatment
3% DSS

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Colonic epithelial scraping Tru-seq Illumina Kit according to manufacturer's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30320398
Reads aligned (%)
96.1
Duplicates removed (%)
36.6
Number of peaks
3623 (qval < 1E-05)

mm9

Number of total reads
30320398
Reads aligned (%)
95.8
Duplicates removed (%)
36.7
Number of peaks
3620 (qval < 1E-05)

Base call quality data from DBCLS SRA