SRX378044
GSM1266726: H3K27ac ChIPSeq DSS; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colonic epithelial cells
antibody
H3K27ac (Ab4729; Lot # GR28147-1)
treatment
3% DSS

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Colonic epithelial scraping Tru-seq Illumina Kit according to manufacturer's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25913355
Reads aligned (%)
99.5
Duplicates removed (%)
36.0
Number of peaks
41980 (qval < 1E-05)

mm9

Number of total reads
25913355
Reads aligned (%)
99.4
Duplicates removed (%)
36.0
Number of peaks
41979 (qval < 1E-05)

Base call quality data from DBCLS SRA