Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Spleen

Cell type

Spleen

MeSH Description

An encapsulated lymphatic organ through which venous blood filters.

Sample

source_name

Nuclei isolated from tissue

strain/background

C57BL/6J

tissue

Spleen

gender

male

age

8 weeks

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Tissues were dissected and nuclei were isolated via a tissue-specific protocol (please see associated publication for more details). Please see associated publication for details on library construction.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

197645802

Reads aligned (%)

90.3

Duplicates removed (%)

56.3

Number of peaks

43852 (qval < 1E-05)

mm9

Number of total reads

197645802

Reads aligned (%)

90.2

Duplicates removed (%)

56.5

Number of peaks

43839 (qval < 1E-05)