Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Small intestine
NA
NA

Attributes by original data submitter

Sample

source_name
Nuclei isolated from tissue
strain/background
C57BL/6J
tissue
Small Intestine
gender
male
age
8 weeks

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tissues were dissected and nuclei were isolated via a tissue-specific protocol (please see associated publication for more details). Please see associated publication for details on library construction.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
230931052
Reads aligned (%)
92.8
Duplicates removed (%)
37.7
Number of peaks
1720 (qval < 1E-05)

mm9

Number of total reads
230931052
Reads aligned (%)
92.6
Duplicates removed (%)
37.9
Number of peaks
1789 (qval < 1E-05)

Base call quality data from DBCLS SRA