SRX3772399
GSM3032906: ChIP-Seq deltaSTAG2 CTCF; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
OCI-AML3
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
OCI-AML3
cell line
OCI-AML3
cell type
Early Monocycte/Macrophages
stag2 status
△STAG2
chip_antibody
Diagenode CTCF polyclonal antibody - Classic (Lot A2359-00234P)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and target-DNA complexes were isolated with antibody. Diagenode Microplex V1

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66866502
Reads aligned (%)
98.3
Duplicates removed (%)
25.1
Number of peaks
81647 (qval < 1E-05)

hg19

Number of total reads
66866502
Reads aligned (%)
98.0
Duplicates removed (%)
26.0
Number of peaks
80030 (qval < 1E-05)

Base call quality data from DBCLS SRA