SRX3769518
GSM3032379: DOX NO FP rep3.fastq.gz; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Gonad
Cell type
RMG-I
Primary Tissue
Ovary
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
RNAPII was profiled in RMG-1 clone in ARID1A-KD condition
cell line
RMG-1
chip antibody
Custom, rabbit polyclonal, raised against N terminus of RNAPII

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58466024
Reads aligned (%)
93.8
Duplicates removed (%)
12.9
Number of peaks
4765 (qval < 1E-05)

hg19

Number of total reads
58466024
Reads aligned (%)
92.7
Duplicates removed (%)
16.0
Number of peaks
3378 (qval < 1E-05)

Base call quality data from DBCLS SRA