Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Neural
Cell type
Induced neurons
NA
NA

Attributes by original data submitter

Sample

source_name
MethylC-seq_BAM_5d
cell type
Direct reprogramming from fibroblast to neuron induced with BAM for 5 days

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
A detailed protocol for MethylC-seq libraries preparation can be found in Urich et al., (2015). MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing. Nat Protoc 10, 475-483.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
877240679
Reads aligned (%)
86.0
Coverage rate (×)
12.7
Number of hyper MRs
277515 (qval < 1E-05)

mm9

Number of total reads
877240679
Reads aligned (%)
86.7
Coverage rate (×)
12.6
Number of hyper MRs
277232 (qval < 1E-05)

Base call quality data from DBCLS SRA