Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

CD8+ T cells

NA

NA

Sample

source_name

0H Runx3 KO CD8 CD8+ T-cells

strain

C57BL/6

genotype/variation

Runx3fl/fl

time point

0h

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Treated with 50uL of Tn5 transposase reaction mixture( Nextera DNA Sample Prep Kit) Created libraries using Nextra DNA Sample Kit, as per Buenrostro et al, 2015

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

25041261

Reads aligned (%)

92.6

Duplicates removed (%)

61.8

Number of peaks

20588 (qval < 1E-05)

mm9

Number of total reads

25041261

Reads aligned (%)

92.5

Duplicates removed (%)

62.0

Number of peaks

20575 (qval < 1E-05)